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pylimer-tools
pylimer-tools

Getting Started

  • Installation Guide
  • Getting Started Guide

User Guide

  • Nomenclature
  • Conventions
  • Assumptions
  • Command Line Interface
  • Examples
    • Dissipative Particle Dynamics (DPD) Simulations
      • Dissipative Particle Dynamics (DPD) Simulations
    • Force Balance, Maximum Entropy Homogenization Procedures
      • Force Balance 2
      • Force Balance
      • Maximum Entropy Homogenization Procedure (MEHP)
      • Polydispersity Study
      • Deformation Experiment
    • Network Generation
      • Save Generated Network
      • Simple Crosslinked Network
      • Generate a Polydisperse Polymer Network
      • Adding Topology Information
      • Multi-Component System
      • Custom Crosslinking with Callback Functions
      • Monte Carlo Configuration
      • Generate Vulcanized Networks
    • Normal Mode Analysis
      • Normal Mode Analysis (NMA)
    • File I/O: Readers & Writers
      • pylimer-tools Output Reader
      • Correlated Averages Reader
      • Histogram Reader
      • Performance and Caching
      • Unit Conversion
      • Log & Thermo File Reader
      • Extract Trajectory Frame to Data File
      • Dump File Reader
      • Time-Averaged Data Reader
      • Convert for Bond Swapping
      • Data File Reader
      • Memory-Efficient Dump File Reading
      • Data File Writer
    • Structure Analysis
      • Decompose/Split Structure
      • End-to-End Distribution
      • Loop Finding and Analysis
      • Extract Synthesis Parameters
    • Trajectory Analysis
      • Trajectory Analysis
  • Acknowledgements
  • References

API Reference

  • src
    • pylimer_tools package
      • pylimer_tools.calc package
      • pylimer_tools.io package
      • pylimer_tools.utils package
    • pylimer_tools_cpp package
      • do_linear_walk_chain_from_to
      • do_random_walk
      • do_random_walk_chain_from_to
      • do_random_walk_chain_from_to_mc
      • inverse_langevin
      • randomly_sample_entanglements
      • split_csv
      • version_information
      • Atom
      • AtomPairEntanglements
      • AtomStyle
      • AveFileReader
      • BackTrackStatus
      • Box
      • ComputedDoubleValues
      • ComputedIntValues
      • DPDSimulator
      • DataFileReader
      • DataFileWriter
      • DumpFileReader
      • ExitReason
      • LazyUniverseSequenceIterator
      • LinearMaxDistanceProvider
      • LinkSwappingMode
      • MCUniverseGenerator
      • MEHPForceBalance
      • MEHPForceBalance2
      • MEHPForceEvaluator
      • MEHPForceRelaxation
      • MaxDistanceProvider
      • Molecule
      • MoleculeIterator
      • MoleculeType
      • NeighbourList
      • NoMaxDistanceProvider
      • NonGaussianSpringForceEvaluator
      • NormalModeAnalyzer
      • OutputConfiguration
      • SLESolver
      • SimpleSpringMEHPForceEvaluator
      • SimplifiedBalance2Network
      • SimplifiedBalanceNetwork
      • SimplifiedNetwork
      • StructureSimplificationMode
      • Universe
      • UniverseSequence
      • ZScoreMaxDistanceProvider
      • STOP
      • TRACK_BACKWARD
      • TRACK_FORWARD
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