# src

* [pylimer_tools package](pylimer_tools.html.md)
  * [Subpackages](pylimer_tools.html.md#subpackages)
    * [pylimer_tools.calc package](pylimer_tools.calc.html.md)
      * [Submodules](pylimer_tools.calc.html.md#submodules)
      * [pylimer_tools.calc.mehp_utilities module](pylimer_tools.calc.html.md#module-pylimer_tools.calc.mehp_utilities)
        * [`compute_cycle_rank()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.compute_cycle_rank)
        * [`compute_effective_nr_density_of_junctions()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.compute_effective_nr_density_of_junctions)
        * [`compute_effective_nr_density_of_network()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.compute_effective_nr_density_of_network)
        * [`compute_mean_universe_volume()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.compute_mean_universe_volume)
        * [`compute_topological_factor()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.compute_topological_factor)
        * [`predict_shear_modulus()`](pylimer_tools.calc.html.md#pylimer_tools.calc.mehp_utilities.predict_shear_modulus)
      * [pylimer_tools.calc.miller_macosko_theory module](pylimer_tools.calc.html.md#module-pylimer_tools.calc.miller_macosko_theory)
        * [`compute_entanglement_modulus()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_entanglement_modulus)
        * [`compute_extracted_modulus()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_extracted_modulus)
        * [`compute_junction_modulus()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_junction_modulus)
        * [`compute_miller_macosko_probabilities()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_miller_macosko_probabilities)
        * [`compute_modulus_decomposition()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_modulus_decomposition)
        * [`compute_probability_that_bifunctional_monomer_is_dangling()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_probability_that_bifunctional_monomer_is_dangling)
        * [`compute_probability_that_bifunctional_monomer_is_effective()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_probability_that_bifunctional_monomer_is_effective)
        * [`compute_probability_that_crosslink_is_dangling()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_probability_that_crosslink_is_dangling)
        * [`compute_probability_that_crosslink_is_effective()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_probability_that_crosslink_is_effective)
        * [`compute_probability_that_crosslink_with_degree_is_dangling()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_probability_that_crosslink_with_degree_is_dangling)
        * [`compute_trapping_factor()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_trapping_factor)
        * [`compute_weight_fraction_of_backbone()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_weight_fraction_of_backbone)
        * [`compute_weight_fraction_of_dangling_chains()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_weight_fraction_of_dangling_chains)
        * [`compute_weight_fraction_of_soluble_material()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_weight_fraction_of_soluble_material)
        * [`compute_weight_fraction_of_soluble_material_from_weight_fractions()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.compute_weight_fraction_of_soluble_material_from_weight_fractions)
        * [`predict_gelation_point()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_gelation_point)
        * [`predict_maximum_p()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_maximum_p)
        * [`predict_number_density_of_junction_points()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_number_density_of_junction_points)
        * [`predict_number_density_of_network_strands()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_number_density_of_network_strands)
        * [`predict_p_from_w_sol()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_p_from_w_sol)
        * [`predict_shear_modulus()`](pylimer_tools.calc.html.md#pylimer_tools.calc.miller_macosko_theory.predict_shear_modulus)
      * [pylimer_tools.calc.stoichiometric_relationships module](pylimer_tools.calc.html.md#module-pylimer_tools.calc.stoichiometric_relationships)
        * [`compute_number_fractions()`](pylimer_tools.calc.html.md#pylimer_tools.calc.stoichiometric_relationships.compute_number_fractions)
        * [`compute_strand_number_density()`](pylimer_tools.calc.html.md#pylimer_tools.calc.stoichiometric_relationships.compute_strand_number_density)
        * [`compute_weight_fractions()`](pylimer_tools.calc.html.md#pylimer_tools.calc.stoichiometric_relationships.compute_weight_fractions)
      * [pylimer_tools.calc.structure_analysis module](pylimer_tools.calc.html.md#module-pylimer_tools.calc.structure_analysis)
        * [`compute_crosslinker_conversion()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_crosslinker_conversion)
        * [`compute_effective_crosslinker_functionalities()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_effective_crosslinker_functionalities)
        * [`compute_effective_crosslinker_functionality()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_effective_crosslinker_functionality)
        * [`compute_end_to_end_vectors()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_end_to_end_vectors)
        * [`compute_extent_of_reaction()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_extent_of_reaction)
        * [`compute_fraction_of_bifunctional_reactive_sites()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_fraction_of_bifunctional_reactive_sites)
        * [`compute_mean_end_to_end_distances()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_mean_end_to_end_distances)
        * [`compute_mean_end_to_end_vectors()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_mean_end_to_end_vectors)
        * [`compute_stoichiometric_imbalance()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_stoichiometric_imbalance)
        * [`compute_weight_fractions()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.compute_weight_fractions)
        * [`measure_lower_bound_weight_fraction_of_soluble_material()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.measure_lower_bound_weight_fraction_of_soluble_material)
        * [`measure_weight_fraction_of_backbone()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.measure_weight_fraction_of_backbone)
        * [`measure_weight_fraction_of_dangling_chains()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.measure_weight_fraction_of_dangling_chains)
        * [`measure_weight_fraction_of_soluble_material()`](pylimer_tools.calc.html.md#pylimer_tools.calc.structure_analysis.measure_weight_fraction_of_soluble_material)
      * [Module contents](pylimer_tools.calc.html.md#module-pylimer_tools.calc)
    * [pylimer_tools.io package](pylimer_tools.io.html.md)
      * [Submodules](pylimer_tools.io.html.md#submodules)
      * [pylimer_tools.io.bead_spring_parameter_provider module](pylimer_tools.io.html.md#module-pylimer_tools.io.bead_spring_parameter_provider)
        * [`ParameterType`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.ParameterType)
        * [`Parameters`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.Parameters)
        * [`assemble_gaussian_parameters_from_kuhn()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.assemble_gaussian_parameters_from_kuhn)
        * [`get_gaussian_parameters_for_polymer()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.get_gaussian_parameters_for_polymer)
        * [`get_kg_lj_parameters_for_polymer()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.get_kg_lj_parameters_for_polymer)
        * [`get_kuhn_parameters_for_polymer()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.get_kuhn_parameters_for_polymer)
        * [`get_parameters_for_polymer()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.get_parameters_for_polymer)
        * [`get_supported_polymer_names()`](pylimer_tools.io.html.md#pylimer_tools.io.bead_spring_parameter_provider.get_supported_polymer_names)
      * [pylimer_tools.io.extract_thermo_data module](pylimer_tools.io.html.md#module-pylimer_tools.io.extract_thermo_data)
        * [`detect_headers()`](pylimer_tools.io.html.md#pylimer_tools.io.extract_thermo_data.detect_headers)
        * [`extract_thermo_params()`](pylimer_tools.io.html.md#pylimer_tools.io.extract_thermo_data.extract_thermo_params)
        * [`get_thermo_cache_name_suffix()`](pylimer_tools.io.html.md#pylimer_tools.io.extract_thermo_data.get_thermo_cache_name_suffix)
        * [`read_multi_section_separated_value_file()`](pylimer_tools.io.html.md#pylimer_tools.io.extract_thermo_data.read_multi_section_separated_value_file)
        * [`read_one_group()`](pylimer_tools.io.html.md#pylimer_tools.io.extract_thermo_data.read_one_group)
      * [pylimer_tools.io.polymer_data module](pylimer_tools.io.html.md#module-pylimer_tools.io.polymer_data)
        * [`PolymerData`](pylimer_tools.io.html.md#pylimer_tools.io.polymer_data.PolymerData)
        * [`PolymerDataFrame`](pylimer_tools.io.html.md#pylimer_tools.io.polymer_data.PolymerDataFrame)
        * [`get_available_polymers()`](pylimer_tools.io.html.md#pylimer_tools.io.polymer_data.get_available_polymers)
        * [`get_polymer_by_name()`](pylimer_tools.io.html.md#pylimer_tools.io.polymer_data.get_polymer_by_name)
        * [`load_everaers_et_al_data()`](pylimer_tools.io.html.md#pylimer_tools.io.polymer_data.load_everaers_et_al_data)
      * [pylimer_tools.io.read_pylimer_tools_output_file module](pylimer_tools.io.html.md#module-pylimer_tools.io.read_pylimer_tools_output_file)
        * [`read_avg_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_pylimer_tools_output_file.read_avg_file)
      * [pylimer_tools.io.read_lammps_output_file module](pylimer_tools.io.html.md#module-pylimer_tools.io.read_lammps_output_file)
        * [`read_averages_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_averages_file)
        * [`read_correlation_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_correlation_file)
        * [`read_data_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_data_file)
        * [`read_dump_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_dump_file)
        * [`read_histogram_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_histogram_file)
        * [`read_log_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_log_file)
        * [`read_sectioned_averages_file()`](pylimer_tools.io.html.md#pylimer_tools.io.read_lammps_output_file.read_sectioned_averages_file)
      * [pylimer_tools.io.unit_styles module](pylimer_tools.io.html.md#module-pylimer_tools.io.unit_styles)
        * [`UnitStyle`](pylimer_tools.io.html.md#pylimer_tools.io.unit_styles.UnitStyle)
        * [`UnitStyleFactory`](pylimer_tools.io.html.md#pylimer_tools.io.unit_styles.UnitStyleFactory)
      * [Module contents](pylimer_tools.io.html.md#module-pylimer_tools.io)
    * [pylimer_tools.utils package](pylimer_tools.utils.html.md)
      * [Submodules](pylimer_tools.utils.html.md#submodules)
      * [pylimer_tools.utils.cache_utility module](pylimer_tools.utils.html.md#module-pylimer_tools.utils.cache_utility)
        * [`do_cache()`](pylimer_tools.utils.html.md#pylimer_tools.utils.cache_utility.do_cache)
        * [`get_cache_file_name()`](pylimer_tools.utils.html.md#pylimer_tools.utils.cache_utility.get_cache_file_name)
        * [`is_current_cache()`](pylimer_tools.utils.html.md#pylimer_tools.utils.cache_utility.is_current_cache)
        * [`load_cache()`](pylimer_tools.utils.html.md#pylimer_tools.utils.cache_utility.load_cache)
      * [pylimer_tools.utils.data_utility module](pylimer_tools.utils.html.md#module-pylimer_tools.utils.data_utility)
        * [`apply_to_numeric_ignore_compat()`](pylimer_tools.utils.html.md#pylimer_tools.utils.data_utility.apply_to_numeric_ignore_compat)
        * [`get_tail()`](pylimer_tools.utils.html.md#pylimer_tools.utils.data_utility.get_tail)
        * [`unify_data_stepsizes()`](pylimer_tools.utils.html.md#pylimer_tools.utils.data_utility.unify_data_stepsizes)
      * [pylimer_tools.utils.optimize_dataframe module](pylimer_tools.utils.html.md#module-pylimer_tools.utils.optimize_dataframe)
        * [`optimize()`](pylimer_tools.utils.html.md#pylimer_tools.utils.optimize_dataframe.optimize)
        * [`optimize_floats()`](pylimer_tools.utils.html.md#pylimer_tools.utils.optimize_dataframe.optimize_floats)
        * [`optimize_ints()`](pylimer_tools.utils.html.md#pylimer_tools.utils.optimize_dataframe.optimize_ints)
        * [`optimize_objects()`](pylimer_tools.utils.html.md#pylimer_tools.utils.optimize_dataframe.optimize_objects)
        * [`reduce_mem_usage()`](pylimer_tools.utils.html.md#pylimer_tools.utils.optimize_dataframe.reduce_mem_usage)
      * [Module contents](pylimer_tools.utils.html.md#module-pylimer_tools.utils)
  * [Submodules](pylimer_tools.html.md#submodules)
  * [pylimer_tools.analyse_networks module](pylimer_tools.html.md#module-pylimer_tools.analyse_networks)
    * [Analyse Networks](pylimer_tools.html.md#analyse-networks)
  * [pylimer_tools.basic_lammps_structure_stats module](pylimer_tools.html.md#module-pylimer_tools.basic_lammps_structure_stats)
  * [pylimer_tools.displace_randomly module](pylimer_tools.html.md#module-pylimer_tools.displace_randomly)
  * [pylimer_tools.generate_network module](pylimer_tools.html.md#module-pylimer_tools.generate_network)
    * [Generate MC Network](pylimer_tools.html.md#generate-mc-network)
    * [`generate_structure()`](pylimer_tools.html.md#pylimer_tools.generate_network.generate_structure)
    * [`is_active_network()`](pylimer_tools.html.md#pylimer_tools.generate_network.is_active_network)
    * [`prepare_structure_generation()`](pylimer_tools.html.md#pylimer_tools.generate_network.prepare_structure_generation)
    * [`print_with_time()`](pylimer_tools.html.md#pylimer_tools.generate_network.print_with_time)
  * [Module contents](pylimer_tools.html.md#module-pylimer_tools)
* [pylimer_tools_cpp package](pylimer_tools_cpp.html.md)
  * [Module contents](pylimer_tools_cpp.html.md#module-contents)
  * [pylimer_tools_cpp Module](pylimer_tools_cpp.html.md#module-pylimer_tools_cpp)
    * [pylimer_tools_cpp](pylimer_tools_cpp.html.md#pylimer-tools-cpp)
    * [Functions](pylimer_tools_cpp.html.md#functions)
      * [do_linear_walk_chain_from_to](api/pylimer_tools_cpp.do_linear_walk_chain_from_to.html.md)
        * [`do_linear_walk_chain_from_to()`](api/pylimer_tools_cpp.do_linear_walk_chain_from_to.html.md#pylimer_tools_cpp.do_linear_walk_chain_from_to)
      * [do_random_walk](api/pylimer_tools_cpp.do_random_walk.html.md)
        * [`do_random_walk()`](api/pylimer_tools_cpp.do_random_walk.html.md#pylimer_tools_cpp.do_random_walk)
      * [do_random_walk_chain_from_to](api/pylimer_tools_cpp.do_random_walk_chain_from_to.html.md)
        * [`do_random_walk_chain_from_to()`](api/pylimer_tools_cpp.do_random_walk_chain_from_to.html.md#pylimer_tools_cpp.do_random_walk_chain_from_to)
      * [do_random_walk_chain_from_to_mc](api/pylimer_tools_cpp.do_random_walk_chain_from_to_mc.html.md)
        * [`do_random_walk_chain_from_to_mc()`](api/pylimer_tools_cpp.do_random_walk_chain_from_to_mc.html.md#pylimer_tools_cpp.do_random_walk_chain_from_to_mc)
      * [inverse_langevin](api/pylimer_tools_cpp.inverse_langevin.html.md)
        * [`inverse_langevin()`](api/pylimer_tools_cpp.inverse_langevin.html.md#pylimer_tools_cpp.inverse_langevin)
      * [randomly_sample_entanglements](api/pylimer_tools_cpp.randomly_sample_entanglements.html.md)
        * [`randomly_sample_entanglements()`](api/pylimer_tools_cpp.randomly_sample_entanglements.html.md#pylimer_tools_cpp.randomly_sample_entanglements)
      * [split_csv](api/pylimer_tools_cpp.split_csv.html.md)
        * [`split_csv()`](api/pylimer_tools_cpp.split_csv.html.md#pylimer_tools_cpp.split_csv)
      * [version_information](api/pylimer_tools_cpp.version_information.html.md)
        * [`version_information()`](api/pylimer_tools_cpp.version_information.html.md#pylimer_tools_cpp.version_information)
    * [Classes](pylimer_tools_cpp.html.md#classes)
      * [Atom](api/pylimer_tools_cpp.Atom.html.md)
        * [`Atom`](api/pylimer_tools_cpp.Atom.html.md#pylimer_tools_cpp.Atom)
      * [AtomPairEntanglements](api/pylimer_tools_cpp.AtomPairEntanglements.html.md)
        * [`AtomPairEntanglements`](api/pylimer_tools_cpp.AtomPairEntanglements.html.md#pylimer_tools_cpp.AtomPairEntanglements)
      * [AtomStyle](api/pylimer_tools_cpp.AtomStyle.html.md)
        * [`AtomStyle`](api/pylimer_tools_cpp.AtomStyle.html.md#pylimer_tools_cpp.AtomStyle)
      * [AveFileReader](api/pylimer_tools_cpp.AveFileReader.html.md)
        * [`AveFileReader`](api/pylimer_tools_cpp.AveFileReader.html.md#pylimer_tools_cpp.AveFileReader)
      * [BackTrackStatus](api/pylimer_tools_cpp.BackTrackStatus.html.md)
        * [`BackTrackStatus`](api/pylimer_tools_cpp.BackTrackStatus.html.md#pylimer_tools_cpp.BackTrackStatus)
      * [Box](api/pylimer_tools_cpp.Box.html.md)
        * [`Box`](api/pylimer_tools_cpp.Box.html.md#pylimer_tools_cpp.Box)
      * [ComputedDoubleValues](api/pylimer_tools_cpp.ComputedDoubleValues.html.md)
        * [`ComputedDoubleValues`](api/pylimer_tools_cpp.ComputedDoubleValues.html.md#pylimer_tools_cpp.ComputedDoubleValues)
      * [ComputedIntValues](api/pylimer_tools_cpp.ComputedIntValues.html.md)
        * [`ComputedIntValues`](api/pylimer_tools_cpp.ComputedIntValues.html.md#pylimer_tools_cpp.ComputedIntValues)
      * [DPDSimulator](api/pylimer_tools_cpp.DPDSimulator.html.md)
        * [`DPDSimulator`](api/pylimer_tools_cpp.DPDSimulator.html.md#pylimer_tools_cpp.DPDSimulator)
      * [DataFileReader](api/pylimer_tools_cpp.DataFileReader.html.md)
        * [`DataFileReader`](api/pylimer_tools_cpp.DataFileReader.html.md#pylimer_tools_cpp.DataFileReader)
      * [DataFileWriter](api/pylimer_tools_cpp.DataFileWriter.html.md)
        * [`DataFileWriter`](api/pylimer_tools_cpp.DataFileWriter.html.md#pylimer_tools_cpp.DataFileWriter)
      * [DumpFileReader](api/pylimer_tools_cpp.DumpFileReader.html.md)
        * [`DumpFileReader`](api/pylimer_tools_cpp.DumpFileReader.html.md#pylimer_tools_cpp.DumpFileReader)
      * [ExitReason](api/pylimer_tools_cpp.ExitReason.html.md)
        * [`ExitReason`](api/pylimer_tools_cpp.ExitReason.html.md#pylimer_tools_cpp.ExitReason)
      * [LazyUniverseSequenceIterator](api/pylimer_tools_cpp.LazyUniverseSequenceIterator.html.md)
        * [`LazyUniverseSequenceIterator`](api/pylimer_tools_cpp.LazyUniverseSequenceIterator.html.md#pylimer_tools_cpp.LazyUniverseSequenceIterator)
      * [LinearMaxDistanceProvider](api/pylimer_tools_cpp.LinearMaxDistanceProvider.html.md)
        * [`LinearMaxDistanceProvider`](api/pylimer_tools_cpp.LinearMaxDistanceProvider.html.md#pylimer_tools_cpp.LinearMaxDistanceProvider)
      * [LinkSwappingMode](api/pylimer_tools_cpp.LinkSwappingMode.html.md)
        * [`LinkSwappingMode`](api/pylimer_tools_cpp.LinkSwappingMode.html.md#pylimer_tools_cpp.LinkSwappingMode)
      * [MCUniverseGenerator](api/pylimer_tools_cpp.MCUniverseGenerator.html.md)
        * [`MCUniverseGenerator`](api/pylimer_tools_cpp.MCUniverseGenerator.html.md#pylimer_tools_cpp.MCUniverseGenerator)
      * [MEHPForceBalance](api/pylimer_tools_cpp.MEHPForceBalance.html.md)
        * [`MEHPForceBalance`](api/pylimer_tools_cpp.MEHPForceBalance.html.md#pylimer_tools_cpp.MEHPForceBalance)
      * [MEHPForceBalance2](api/pylimer_tools_cpp.MEHPForceBalance2.html.md)
        * [`MEHPForceBalance2`](api/pylimer_tools_cpp.MEHPForceBalance2.html.md#pylimer_tools_cpp.MEHPForceBalance2)
      * [MEHPForceEvaluator](api/pylimer_tools_cpp.MEHPForceEvaluator.html.md)
        * [`MEHPForceEvaluator`](api/pylimer_tools_cpp.MEHPForceEvaluator.html.md#pylimer_tools_cpp.MEHPForceEvaluator)
      * [MEHPForceRelaxation](api/pylimer_tools_cpp.MEHPForceRelaxation.html.md)
        * [`MEHPForceRelaxation`](api/pylimer_tools_cpp.MEHPForceRelaxation.html.md#pylimer_tools_cpp.MEHPForceRelaxation)
      * [MaxDistanceProvider](api/pylimer_tools_cpp.MaxDistanceProvider.html.md)
        * [`MaxDistanceProvider`](api/pylimer_tools_cpp.MaxDistanceProvider.html.md#pylimer_tools_cpp.MaxDistanceProvider)
      * [Molecule](api/pylimer_tools_cpp.Molecule.html.md)
        * [`Molecule`](api/pylimer_tools_cpp.Molecule.html.md#pylimer_tools_cpp.Molecule)
      * [MoleculeIterator](api/pylimer_tools_cpp.MoleculeIterator.html.md)
        * [`MoleculeIterator`](api/pylimer_tools_cpp.MoleculeIterator.html.md#pylimer_tools_cpp.MoleculeIterator)
      * [MoleculeType](api/pylimer_tools_cpp.MoleculeType.html.md)
        * [`MoleculeType`](api/pylimer_tools_cpp.MoleculeType.html.md#pylimer_tools_cpp.MoleculeType)
      * [NeighbourList](api/pylimer_tools_cpp.NeighbourList.html.md)
        * [`NeighbourList`](api/pylimer_tools_cpp.NeighbourList.html.md#pylimer_tools_cpp.NeighbourList)
      * [NoMaxDistanceProvider](api/pylimer_tools_cpp.NoMaxDistanceProvider.html.md)
        * [`NoMaxDistanceProvider`](api/pylimer_tools_cpp.NoMaxDistanceProvider.html.md#pylimer_tools_cpp.NoMaxDistanceProvider)
      * [NonGaussianSpringForceEvaluator](api/pylimer_tools_cpp.NonGaussianSpringForceEvaluator.html.md)
        * [`NonGaussianSpringForceEvaluator`](api/pylimer_tools_cpp.NonGaussianSpringForceEvaluator.html.md#pylimer_tools_cpp.NonGaussianSpringForceEvaluator)
      * [NormalModeAnalyzer](api/pylimer_tools_cpp.NormalModeAnalyzer.html.md)
        * [`NormalModeAnalyzer`](api/pylimer_tools_cpp.NormalModeAnalyzer.html.md#pylimer_tools_cpp.NormalModeAnalyzer)
      * [NormalModeSolver](api/pylimer_tools_cpp.NormalModeSolver.html.md)
        * [`NormalModeSolver`](api/pylimer_tools_cpp.NormalModeSolver.html.md#pylimer_tools_cpp.NormalModeSolver)
      * [OutputConfiguration](api/pylimer_tools_cpp.OutputConfiguration.html.md)
        * [`OutputConfiguration`](api/pylimer_tools_cpp.OutputConfiguration.html.md#pylimer_tools_cpp.OutputConfiguration)
      * [SLESolver](api/pylimer_tools_cpp.SLESolver.html.md)
        * [`SLESolver`](api/pylimer_tools_cpp.SLESolver.html.md#pylimer_tools_cpp.SLESolver)
      * [SimpleSpringMEHPForceEvaluator](api/pylimer_tools_cpp.SimpleSpringMEHPForceEvaluator.html.md)
        * [`SimpleSpringMEHPForceEvaluator`](api/pylimer_tools_cpp.SimpleSpringMEHPForceEvaluator.html.md#pylimer_tools_cpp.SimpleSpringMEHPForceEvaluator)
      * [SimplifiedBalance2Network](api/pylimer_tools_cpp.SimplifiedBalance2Network.html.md)
        * [`SimplifiedBalance2Network`](api/pylimer_tools_cpp.SimplifiedBalance2Network.html.md#pylimer_tools_cpp.SimplifiedBalance2Network)
      * [SimplifiedBalanceNetwork](api/pylimer_tools_cpp.SimplifiedBalanceNetwork.html.md)
        * [`SimplifiedBalanceNetwork`](api/pylimer_tools_cpp.SimplifiedBalanceNetwork.html.md#pylimer_tools_cpp.SimplifiedBalanceNetwork)
      * [SimplifiedNetwork](api/pylimer_tools_cpp.SimplifiedNetwork.html.md)
        * [`SimplifiedNetwork`](api/pylimer_tools_cpp.SimplifiedNetwork.html.md#pylimer_tools_cpp.SimplifiedNetwork)
      * [StructureSimplificationMode](api/pylimer_tools_cpp.StructureSimplificationMode.html.md)
        * [`StructureSimplificationMode`](api/pylimer_tools_cpp.StructureSimplificationMode.html.md#pylimer_tools_cpp.StructureSimplificationMode)
      * [Universe](api/pylimer_tools_cpp.Universe.html.md)
        * [`Universe`](api/pylimer_tools_cpp.Universe.html.md#pylimer_tools_cpp.Universe)
      * [UniverseSequence](api/pylimer_tools_cpp.UniverseSequence.html.md)
        * [`UniverseSequence`](api/pylimer_tools_cpp.UniverseSequence.html.md#pylimer_tools_cpp.UniverseSequence)
      * [ZScoreMaxDistanceProvider](api/pylimer_tools_cpp.ZScoreMaxDistanceProvider.html.md)
        * [`ZScoreMaxDistanceProvider`](api/pylimer_tools_cpp.ZScoreMaxDistanceProvider.html.md#pylimer_tools_cpp.ZScoreMaxDistanceProvider)
    * [Variables](pylimer_tools_cpp.html.md#variables)
      * [STOP](api/pylimer_tools_cpp.STOP.html.md)
        * [`STOP`](api/pylimer_tools_cpp.STOP.html.md#pylimer_tools_cpp.STOP)
      * [TRACK_BACKWARD](api/pylimer_tools_cpp.TRACK_BACKWARD.html.md)
        * [`TRACK_BACKWARD`](api/pylimer_tools_cpp.TRACK_BACKWARD.html.md#pylimer_tools_cpp.TRACK_BACKWARD)
      * [TRACK_FORWARD](api/pylimer_tools_cpp.TRACK_FORWARD.html.md)
        * [`TRACK_FORWARD`](api/pylimer_tools_cpp.TRACK_FORWARD.html.md#pylimer_tools_cpp.TRACK_FORWARD)